Education

• M.Sc., Computer Engineering, Summer 2018
  • Bilkent University, Ankara, Turkey
  • Thesis: “Characterization of large structural variation using linked-reads”.
• B. Sc., Computer Engineering, 2017
  • Bilkent University, Ankara, Turkey

Publications

• TKSM: Highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator. Fatih Karaoğlanoğlu*, Baraa Orabi, Ryan Flannigan, Cedric Chauve, Faraz Hach. Bioinformatics, 40 (2): btae051, 2024. *Co-first author. Preprint.
• An androgen receptor switch underlies lineage infidelity in treatment-resistant prostate cancer. A Davies, S Nouruzi, D Ganguli, T Namekawa, D Thaper, S Linder, Fatih Karaoglanoglu, …, Amina Zoubeidi Nature Cell Biology 23 (9), 1023-1034, 2021
• Genion, an accurate tool to detect gene fusion from long transcriptomics reads. Fatih Karaoglanoglu, C Chauve, F Hach BMC Genomics 23 (1), 1-13, 2022
• VALOR2: characterization of large-scale structural variants using linked-reads. Fatih Karaoglanoglu, Camir Ricketts, Ezgi Ebren, Marzieh Eslami Rasekh, Iman Hajirasouliha, Can Alkan. Genome Biology, 21 (1): 72, 2020.

After Alkan Lab

After graduation, Fatih pursued his Ph.D. at Simon Fraser University.