Education

• M.Sc., Computer Engineering, 2024 - present.
  • Bilkent University, Ankara, Turkey
• B.Sc., Computer Engineering, 2020 - 2024.
  • Bilkent University, Ankara, Turkey

Publications

• De Bruijn graphs for pangenomics: in-depth performance benchmarking of de Bruijn graph-based tools for read mapping. Zülal Bingöl, Berkan Şahin, Klea Zambaku, Ricardo Roman-Brenes, Konstantina Koliogeorgi, Can Firtina, Onur Mutlu, Can Alkan. Full Paper: Briefings in Bioinformatics

• Processing-in-memory for genomics workloads. William Andrew Simon, Leonid Yavits, Konstantina Koliogeorgi, Yann Falevoz, Yoshihiro Shibuya, Dominique Lavenier, Irem Boybat, Klea Zambaku, Berkan Şahin, Mohammad Sadrosadati, Onur Mutlu, Abu Sebastian, Rayan Chikhi, Can Alkan, BioPIM Consortium. Full Paper: IEEE MICRO